Difference between revisions of "Guides/ontology"
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− | + | The mx database infrastructure (Yoder et al., in prep) includes an ontology building module that is easy to use and quite powerful. We're using mx as the backend of our [http://hymglossary.tamu.edu Hymenoptera Glossary]. Information on how to use it is included below. | |
+ | |||
+ | ---- | ||
+ | |||
+ | <table> | ||
+ | <tr> | ||
+ | <td width="400"> | ||
+ | [[Welcome Screen]]<br /> | ||
+ | The first screen you see when you log in and select the Hymenoptera Ontology project link. | ||
+ | </td> | ||
+ | <td> | ||
+ | [[Image:welcomeSmall.png]] | ||
+ | </td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | ---- | ||
+ | |||
+ | <table> | ||
+ | <tr> | ||
+ | <td width="400"> | ||
+ | [[Search for Term]]<br /> | ||
+ | Search for the term you want to enter to see if it is already there. | ||
+ | </td> | ||
+ | <td> | ||
+ | [[Image:searchSmall.png]] | ||
+ | </td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | ---- | ||
+ | |||
+ | <table> | ||
+ | <tr> | ||
+ | <td width="400"> | ||
+ | [[Search for Reference]]<br /> | ||
+ | If you have a list of terms from a reference you'll want to make sure your reference is already in the database. | ||
+ | </td> | ||
+ | <td> | ||
+ | [[Image:litSearchSmall.png]] | ||
+ | </td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | ---- | ||
+ | |||
+ | <table> | ||
+ | <tr> | ||
+ | <td width="400"> | ||
+ | [[Add a Reference]]<br /> | ||
+ | If your reference is not in the database already you'll want to add it before adding your term(s). | ||
+ | </td> | ||
+ | <td> | ||
+ | [[Image:AddLitSmall.png]] | ||
+ | </td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | ---- | ||
+ | |||
+ | <table> | ||
+ | <tr> | ||
+ | <td width="400"> | ||
+ | [[Add a Term]]<br /> | ||
+ | If your term isn't in the database you can add it using this form. | ||
+ | </td> | ||
+ | <td> | ||
+ | [[Image:addTermSmall.png]] | ||
+ | </td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | ---- | ||
+ | |||
+ | <table> | ||
+ | <tr> | ||
+ | <td width="400"> | ||
+ | [[Add Multiple Terms (Batch Mode)]]<br /> | ||
+ | If your terms aren't in the database you can add them using this form. | ||
+ | </td> | ||
+ | <td> | ||
+ | [[Image:batchSmall.png]] | ||
+ | </td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | ---- | ||
+ | |||
+ | <table> | ||
+ | <tr> | ||
+ | <td width="400"> | ||
+ | [[Add a Relationship]]<br /> | ||
+ | After your term is added you'll want to enter its relationships (e.g., your term is "part of" or a "type of" something). | ||
+ | </td> | ||
+ | <td> | ||
+ | [[Image:addrelSmall.png]] | ||
+ | </td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | ---- | ||
+ | |||
+ | <table> | ||
+ | <tr> | ||
+ | <td width="400"> | ||
+ | [[Add Tags]]<br /> | ||
+ | You can "tag" your term with alternative spellings, alternative definitions (different wording for the same concept - NOT entirely different definitions, which should have their own entries), your own comments etc. using the tag function. | ||
+ | </td> | ||
+ | <td> | ||
+ | [[Image:TagSmall.png]] | ||
+ | </td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | ---- | ||
+ | |||
+ | <table> | ||
+ | <tr> | ||
+ | <td width="400"> | ||
+ | [[View/Edit Tags]]<br /> | ||
+ | If you made an error in your tag (e.g., wrong reference, page numbers, etc.) you can edit it. | ||
+ | </td> | ||
+ | <td> | ||
+ | [[Image:tagsBrowseSmall.png]] | ||
+ | </td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | ---- | ||
+ | |||
+ | <table> | ||
+ | <tr> | ||
+ | <td width="400"> | ||
+ | [[Mark-up your definitions]]<br /> | ||
+ | Click the 'markup definitions' link to highlight and link to terms in your definition that are already in the ontology. | ||
+ | </td> | ||
+ | <td> | ||
+ | [[Image:markSmall.png]] | ||
+ | </td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | ---- | ||
+ | |||
+ | <table> | ||
+ | <tr> | ||
+ | <td width="400"> | ||
+ | [[Manage the ontology (Admin)]]<br /> | ||
+ | Click the 'more-options' link then "manage". | ||
+ | </td> | ||
+ | <td> | ||
+ | [[]] | ||
+ | </td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | |||
+ | ---- | ||
+ | |||
+ | <table> | ||
+ | <tr> | ||
+ | <td width="400"> | ||
+ | [[Navigate and create relationships within a tree view]]<br /> | ||
+ | Click the 'more-options' link then "tree". | ||
+ | </td> | ||
+ | <td> | ||
+ | [[]] | ||
+ | </td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | ---- | ||
+ | |||
+ | <table> | ||
+ | <tr> | ||
+ | <td width="400"> | ||
+ | [[Filter by tags]]<br /> | ||
+ | Click the 'more-options' link then "tag filter". | ||
+ | </td> | ||
+ | <td> | ||
+ | [[]] | ||
+ | </td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | ---- | ||
+ | |||
+ | <table> | ||
+ | <tr> | ||
+ | <td width="400"> | ||
+ | [[Filter by personally edited]]<br /> | ||
+ | Click the 'more-options' link then "personally edited". | ||
+ | </td> | ||
+ | <td> | ||
+ | [[]] | ||
+ | </td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | |||
+ | |||
+ | ---- | ||
+ | |||
+ | <table> | ||
+ | <tr> | ||
+ | <td width="400"> | ||
+ | [[Extract terms from a block of text]]<br /> | ||
+ | Click the 'more-options' link then "proof". | ||
+ | </td> | ||
+ | <td> | ||
+ | [[]] | ||
+ | </td> | ||
+ | </tr> | ||
+ | </table> |
Revision as of 09:58, 12 October 2009
The mx database infrastructure (Yoder et al., in prep) includes an ontology building module that is easy to use and quite powerful. We're using mx as the backend of our Hymenoptera Glossary. Information on how to use it is included below.
Welcome Screen |
Error creating thumbnail: Unable to save thumbnail to destination
|
Search for Term |
Error creating thumbnail: Unable to save thumbnail to destination
|
Search for Reference |
Error creating thumbnail: Unable to save thumbnail to destination
|
Add a Reference |
Error creating thumbnail: Unable to save thumbnail to destination
|
Add a Term |
Error creating thumbnail: Unable to save thumbnail to destination
|
Add Multiple Terms (Batch Mode) |
Error creating thumbnail: Unable to save thumbnail to destination
|
Add a Relationship |
Error creating thumbnail: Unable to save thumbnail to destination
|
Add Tags |
Error creating thumbnail: Unable to save thumbnail to destination
|
View/Edit Tags |
Error creating thumbnail: Unable to save thumbnail to destination
|
Mark-up your definitions |
Error creating thumbnail: Unable to save thumbnail to destination
|
Manage the ontology (Admin) |
[[]] |
Navigate and create relationships within a tree view |
[[]] |
Filter by tags |
[[]] |
Filter by personally edited |
[[]] |
Extract terms from a block of text |
[[]] |