http://mx.phenomix.org/index.php?title=FAQ&feed=atom&action=history FAQ - Revision history 2024-03-29T10:46:56Z Revision history for this page on the wiki MediaWiki 1.20.0 http://mx.phenomix.org/index.php?title=FAQ&diff=4069&oldid=prev Matt at 21:46, 15 December 2011 2011-12-15T21:46:30Z <p></p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 21:46, 15 December 2011</td> </tr><tr><td colspan="2" class="diff-lineno">Line 13:</td> <td colspan="2" class="diff-lineno">Line 13:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>=== Can I run mx without a web-based server? ===</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>=== Can I run mx without a web-based server? ===</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* Yes, the application can be run locally, though it hasn't been designed with this in mind or optimized (speed) for this usage.&#160; Keep in mind you won't be able to share the application over the network or internet, i.e. it could only be accessed at one machine.</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* Yes, the application can be run locally, though it hasn't been designed with this in mind or optimized (speed) for this usage.&#160; Keep in mind you won't be able to share the application over the network or internet, i.e. it could only be accessed at one machine.</div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">=== How do I cite mx? ===</ins></div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">* The short answer is however you see fit. mx was [http://www.tdwg.org/proceedings/article/view/38 introduced at the 2006 TDWG meeting], however it looks a lot different now than it did then. Perhaps the simplest way is to cite it inline with the URL like &quot;We used mx (code and documentation available at http://mx.phenomix.org) to {do stuff}.&quot;</ins></div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>== Data model ==</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>== Data model ==</div></td></tr> </table> Matt http://mx.phenomix.org/index.php?title=FAQ&diff=4066&oldid=prev Matt at 23:08, 18 October 2011 2011-10-18T23:08:41Z <p></p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 23:08, 18 October 2011</td> </tr><tr><td colspan="2" class="diff-lineno">Line 45:</td> <td colspan="2" class="diff-lineno">Line 45:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>** Newick formatted trees &#160;</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>** Newick formatted trees &#160;</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* Specimen related</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* Specimen related</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>** [[<del class="diffchange diffchange-inline">/App</del>/specimen/batch_load|Specimens and lots]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>** [[<ins class="diffchange diffchange-inline">app</ins>/specimen/batch_load|Specimens and lots]]</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>** Verbatim collecting events (labels)</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>** Verbatim collecting events (labels)</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>** Individual Otu names</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>** Individual Otu names</div></td></tr> </table> Matt http://mx.phenomix.org/index.php?title=FAQ&diff=4011&oldid=prev Matt: /* Can you run mx locally and then sync your data to the server? */ 2011-07-26T18:41:21Z <p>‎<span dir="auto"><span class="autocomment">Can you run mx locally and then sync your data to the server?</span></span></p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 18:41, 26 July 2011</td> </tr><tr><td colspan="2" class="diff-lineno">Line 9:</td> <td colspan="2" class="diff-lineno">Line 9:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>=== Can you run mx locally and then sync your data to the server? ===</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>=== Can you run mx locally and then sync your data to the server? ===</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>* <del class="diffchange diffchange-inline">&lt;span style=&quot;color:red;&quot;&gt;answer&lt;</del>/<del class="diffchange diffchange-inline">span&gt;</del></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>* <ins class="diffchange diffchange-inline">Not really.&#160; You could, however, run a copy in development mode locally, and prepare all your data there, then move that en-masse to production</ins>/<ins class="diffchange diffchange-inline">the web.</ins></div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>=== Can I run mx without a web-based server? ===</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>=== Can I run mx without a web-based server? ===</div></td></tr> </table> Matt http://mx.phenomix.org/index.php?title=FAQ&diff=4010&oldid=prev Matt: /* What formats can matrices be exported to? */ 2011-06-26T16:50:06Z <p>‎<span dir="auto"><span class="autocomment">What formats can matrices be exported to?</span></span></p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 16:50, 26 June 2011</td> </tr><tr><td colspan="2" class="diff-lineno">Line 68:</td> <td colspan="2" class="diff-lineno">Line 68:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>=== What formats can matrices be exported to? ===</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>=== What formats can matrices be exported to? ===</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>* NeXML, Nexus, TNT, ASCII tables, and mx database tables</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>* <ins class="diffchange diffchange-inline">OWL (CDAO), </ins>NeXML, Nexus, TNT, ASCII tables, and mx database tables</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>=== Is there an API? ===</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>=== Is there an API? ===</div></td></tr> </table> Matt http://mx.phenomix.org/index.php?title=FAQ&diff=4008&oldid=prev Matt: /* Data entry/import */ 2011-06-10T22:58:55Z <p>‎<span dir="auto"><span class="autocomment">Data entry/import</span></span></p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 22:58, 10 June 2011</td> </tr><tr><td colspan="2" class="diff-lineno">Line 25:</td> <td colspan="2" class="diff-lineno">Line 25:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>== Data entry/import ==</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>== Data entry/import ==</div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">=== How do I load EndNote formatted reference into mx? ===</ins></div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">* See &quot;Ref&quot;-&gt;'more options'-&gt;'import Endnote' [[App/ref/endnote|and see here]].</ins></div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>=== How do I load a Nexus file into mx? ===</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>=== How do I load a Nexus file into mx? ===</div></td></tr> </table> Matt http://mx.phenomix.org/index.php?title=FAQ&diff=3986&oldid=prev Matt: /* Manually entering data one a time can be very annoying, what kind of data can I batch load into mx? */ 2011-04-21T16:37:56Z <p>‎<span dir="auto"><span class="autocomment">Manually entering data one a time can be very annoying, what kind of data can I batch load into mx?</span></span></p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 16:37, 21 April 2011</td> </tr><tr><td colspan="2" class="diff-lineno">Line 41:</td> <td colspan="2" class="diff-lineno">Line 41:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>** Lucid's .xls formatted exports</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>** Lucid's .xls formatted exports</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>** Newick formatted trees &#160;</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>** Newick formatted trees &#160;</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline">*</del>* Specimen related</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>* Specimen related</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>** [[/App/specimen/batch_load|Specimens and lots]]</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>** [[/App/specimen/batch_load|Specimens and lots]]</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>** Verbatim collecting events (labels)</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>** Verbatim collecting events (labels)</div></td></tr> </table> Matt http://mx.phenomix.org/index.php?title=FAQ&diff=3985&oldid=prev Matt: /* Manually entering data one a time can be very annoying, what kind of data can I batch load into mx? */ 2011-04-21T16:37:34Z <p>‎<span dir="auto"><span class="autocomment">Manually entering data one a time can be very annoying, what kind of data can I batch load into mx?</span></span></p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 16:37, 21 April 2011</td> </tr><tr><td colspan="2" class="diff-lineno">Line 37:</td> <td colspan="2" class="diff-lineno">Line 37:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>=== Manually entering data one a time can be very annoying, what kind of data can I batch load into mx? ===</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>=== Manually entering data one a time can be very annoying, what kind of data can I batch load into mx? ===</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>* Nexus formatted matrices</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">* Matrix related</ins></div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>* Lucid's .xls formatted exports</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">*</ins>* Nexus formatted matrices</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>* <del class="diffchange diffchange-inline">.obo formatted files (in part)</del></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">*</ins>* Lucid's .xls formatted exports</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>* Newick formatted trees</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>** Newick formatted trees &#160;</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>* [[<del class="diffchange diffchange-inline">app</del>/specimen|Specimens and lots]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">** Specimen related</ins></div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>* <del class="diffchange diffchange-inline">Individual Otu names</del></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">*</ins>* [[<ins class="diffchange diffchange-inline">/App</ins>/specimen<ins class="diffchange diffchange-inline">/batch_load</ins>|Specimens and lots]]</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>* Verbatim collecting events (labels)</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>** Verbatim collecting events (labels)</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>* Single word epithets (children) of taxon names (e.g. species names for a genus or genera of a family) &#160;</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">** Individual Otu names</ins></div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>* Image files (via a Rake task/command line)</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">* Nomeclature related</ins></div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>* References to MorphBank images</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">*</ins>* Single word epithets (children) of taxon names (e.g. species names for a genus or genera of a family) &#160;</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>* [[app/ref/endnote|Endnote]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">* Image related</ins></div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">*</ins>* Image files (via a Rake task/command line)</div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">*</ins>* References to MorphBank images</div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">* Reference related</ins></div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">*</ins>* [[app/ref/endnote|Endnote]]</div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">* Sequence related</ins></div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* [[app/seq/seqs_from_FASTA|FASTA]]</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; 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color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>=== Can projects be merged? ===</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>=== Can projects be merged? ===</div></td></tr> </table> Matt http://mx.phenomix.org/index.php?title=FAQ&diff=3961&oldid=prev Matt: /* How do I add someone to my project */ 2011-03-06T23:57:43Z <p>‎<span dir="auto"><span class="autocomment">How do I add someone to my project</span></span></p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 23:57, 6 March 2011</td> </tr><tr><td colspan="2" class="diff-lineno">Line 100:</td> <td colspan="2" class="diff-lineno">Line 100:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>== Users ==</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>== Users ==</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>=== How do I add someone to my project ===</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>=== How do I add someone to my project<ins class="diffchange diffchange-inline">? </ins>===</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* Mx uses a FOAF system for creating new accounts. After you sign in navigate to &lt;nowiki&gt;http://yourserver.foo.com/account/signup&lt;/nowiki&gt;.&#160; Signing up a new user also logs that person in, logout to return to your user.&#160; Select your project, click 'settings' and click the link to add a new user to a project.</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>* Mx uses a FOAF system for creating new accounts. After you sign in navigate to &lt;nowiki&gt;http://yourserver.foo.com/account/signup&lt;/nowiki&gt;.&#160; Signing up a new user also logs that person in, logout to return to your user.&#160; Select your project, click 'settings' and click the link to add a new user to a project.</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> </table> Matt http://mx.phenomix.org/index.php?title=FAQ&diff=3957&oldid=prev Matt: /* What's the preferred production/development update path? */ 2011-03-05T15:26:35Z <p>‎<span dir="auto"><span class="autocomment">What&#039;s the preferred production/development update path?</span></span></p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 15:26, 5 March 2011</td> </tr><tr><td colspan="2" class="diff-lineno">Line 67:</td> <td colspan="2" class="diff-lineno">Line 67:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>=== What's the preferred production/development update path? ===</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>=== What's the preferred production/development update path? ===</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>* BACKUP DATA with 'rake mx:db:dump_data', a dump goes in /db/dumps.&#160; Update source (at present the latest source is on the relatively stable /edge/branch).&#160; Migrate the database with 'rake db:migrate RAILS_ENV=development' (you may want to test prior to or after this step with 'rake test').&#160; Dump the data again (first step).&#160; Copy this copy to db/dumps in your development environment.&#160; Load it with 'rake mx:db:restore_last' (note his dumps the current development, so if the reload fails you'll have to delete this dump as it will be more recent than your production copy).&#160; Develop.&#160; Repeat.</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>* BACKUP DATA with 'rake mx:db:dump_data <ins class="diffchange diffchange-inline">RAILS_ENV=production</ins>', a dump goes in <ins class="diffchange diffchange-inline">'''app home'''</ins>/db/dumps.&#160; Update source (at present the latest source is on the relatively stable /edge/branch).&#160; Migrate the database with 'rake db:migrate RAILS_ENV=development' (you may want to test prior to or after this step with 'rake test').&#160; Dump the data again (first step).&#160; Copy this copy to <ins class="diffchange diffchange-inline">'''app home'''/</ins>db/dumps in your development environment.&#160; Load it with 'rake mx:db:restore_last' (note his dumps the current development, so if the reload fails you'll have to delete this dump as it will be more recent than your production copy).&#160; Develop.&#160; Repeat.</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>=== Clicking on a figure on a public site is giving me a 404, how do I fix this? ===</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>=== Clicking on a figure on a public site is giving me a 404, how do I fix this? ===</div></td></tr> </table> Matt http://mx.phenomix.org/index.php?title=FAQ&diff=3956&oldid=prev Matt: /* Data export/access */ 2011-03-05T15:25:36Z <p>‎<span dir="auto"><span class="autocomment">Data export/access</span></span></p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 15:25, 5 March 2011</td> </tr><tr><td colspan="2" class="diff-lineno">Line 58:</td> <td colspan="2" class="diff-lineno">Line 58:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>=== What formats can matrices be exported to? 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