http://mx.phenomix.org/index.php?title=App/otu&feed=atom&action=history App/otu - Revision history 2024-03-28T08:33:31Z Revision history for this page on the wiki MediaWiki 1.20.0 http://mx.phenomix.org/index.php?title=App/otu&diff=4001&oldid=prev Matt at 21:46, 26 April 2011 2011-04-26T21:46:06Z <p></p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 21:46, 26 April 2011</td> </tr><tr><td colspan="2" class="diff-lineno">Line 9:</td> <td colspan="2" class="diff-lineno">Line 9:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div># If you a) have a taxonomic name hierarchy and b) want to represent a 1:1 match of concept to name then simply select the appropriate taxonomic name and do not provide a OTU name</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div># If you a) have a taxonomic name hierarchy and b) want to represent a 1:1 match of concept to name then simply select the appropriate taxonomic name and do not provide a OTU name</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div># If you don't have a 1:1 match, or want to include multiple concepts for a given name identify your OTUs to the finest level within the taxonomic hierarchy by choosing a the closest taxon name, then repeat the working name as an OTU name. Your name might then look like this: '''''Aus'' &lt;span style=&quot;color:blue;&quot;&gt;Aus sp23&lt;/span&gt;'''<del class="diffchange diffchange-inline">. Remember you are not reading the name across from left to right, you're reading up to 4 different names concatenated for display purposes.&#160; Components of that concatenation are shown individually in their respective places</del>.</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div># If you don't have a 1:1 match, or want to include multiple concepts for a given name identify your OTUs to the finest level within the taxonomic hierarchy by choosing a the closest taxon name, then repeat the working name as an OTU name. Your name might then look like this: '''''Aus'' &lt;span style=&quot;color:blue;&quot;&gt;Aus sp23&lt;/span&gt;'''. &#160;</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div># While it is not necessary to tie an OTU to the taxonomic hierarchy you can benefit from doing so as some data (e.g. content) are organized by this hierarchy</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div># While it is not necessary to tie an OTU to the taxonomic hierarchy you can benefit from doing so as some data (e.g. content) are organized by this hierarchy</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div># While anything is permitted names should ''not'' typically formed like '''''Aus'' &lt;span style=&quot;color:blue;&quot;&gt;bus&lt;/span&gt;''' bur rather like this: '''''Aus'' &lt;span style=&quot;color:blue;&quot;&gt;Aus bus&lt;/span&gt;''', i.e. include the redundancy in the OTU name.</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div># While anything is permitted names should ''not'' typically formed like '''''Aus'' &lt;span style=&quot;color:blue;&quot;&gt;bus&lt;/span&gt;''' bur rather like this: '''''Aus'' &lt;span style=&quot;color:blue;&quot;&gt;Aus bus&lt;/span&gt;''', i.e. include the redundancy in the OTU name<ins class="diffchange diffchange-inline">. Remember you are not reading the name across from left to right, you're reading up to 4 different names concatenated for display purposes.&#160; Components of that concatenation are shown individually in their respective places</ins>.</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div># In collaborative labs it's useful to fill in the Sensu/concept field so as to keep OTUs distinguishable by something other than IDs</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div># In collaborative labs it's useful to fill in the Sensu/concept field so as to keep OTUs distinguishable by something other than IDs</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div># Consider making ample use of OTU groups as you create OTUs</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div># Consider making ample use of OTU groups as you create OTUs</div></td></tr> </table> Matt http://mx.phenomix.org/index.php?title=App/otu&diff=4000&oldid=prev Matt at 21:45, 26 April 2011 2011-04-26T21:45:38Z <p></p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 21:45, 26 April 2011</td> </tr><tr><td colspan="2" class="diff-lineno">Line 9:</td> <td colspan="2" class="diff-lineno">Line 9:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div># If you a) have a taxonomic name hierarchy and b) want to represent a 1:1 match of concept to name then simply select the appropriate taxonomic name and do not provide a OTU name</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div># If you a) have a taxonomic name hierarchy and b) want to represent a 1:1 match of concept to name then simply select the appropriate taxonomic name and do not provide a OTU name</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div># If you don't have a 1:1 match, or want to include multiple concepts for a given name identify your OTUs to the finest level within the taxonomic hierarchy by choosing a the closest taxon name, then repeat the working name as an OTU name. Your name might then look like this: '''''Aus'' &lt;span style=&quot;color:blue;&quot;&gt;Aus sp23&lt;/span&gt;'''. <del class="diffchange diffchange-inline"> </del>Remember you are not reading the name across from left to right, you're reading <del class="diffchange diffchange-inline">upto </del>4 different names concatenated for display purposes.&#160; Components of that concatenation are shown individually in their respective places.</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div># If you don't have a 1:1 match, or want to include multiple concepts for a given name identify your OTUs to the finest level within the taxonomic hierarchy by choosing a the closest taxon name, then repeat the working name as an OTU name. Your name might then look like this: '''''Aus'' &lt;span style=&quot;color:blue;&quot;&gt;Aus sp23&lt;/span&gt;'''. Remember you are not reading the name across from left to right, you're reading <ins class="diffchange diffchange-inline">up to </ins>4 different names concatenated for display purposes.&#160; Components of that concatenation are shown individually in their respective places.</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div># While it is not necessary to tie an OTU to the taxonomic hierarchy you can benefit from doing so as some data (e.g. content) are organized by this hierarchy</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div># While it is not necessary to tie an OTU to the taxonomic hierarchy you can benefit from doing so as some data (e.g. content) are organized by this hierarchy</div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"># While anything is permitted names should ''not'' typically formed like '''''Aus'' &lt;span style=&quot;color:blue;&quot;&gt;bus&lt;/span&gt;''' bur rather like this: '''''Aus'' &lt;span style=&quot;color:blue;&quot;&gt;Aus bus&lt;/span&gt;''', i.e. include the redundancy in the OTU name.</ins></div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div># In collaborative labs it's useful to fill in the Sensu/concept field so as to keep OTUs distinguishable by something other than IDs</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div># In collaborative labs it's useful to fill in the Sensu/concept field so as to keep OTUs distinguishable by something other than IDs</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div># Consider making ample use of OTU groups as you create OTUs</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div># Consider making ample use of OTU groups as you create OTUs</div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>== OTU Application help ==</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>== OTU Application help ==</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>{{Special:Prefixindex/App/otu/}}</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>{{Special:Prefixindex/App/otu/}}</div></td></tr> </table> Matt http://mx.phenomix.org/index.php?title=App/otu&diff=3999&oldid=prev Matt at 21:44, 26 April 2011 2011-04-26T21:44:51Z <p></p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 21:44, 26 April 2011</td> </tr><tr><td colspan="2" class="diff-lineno">Line 9:</td> <td colspan="2" class="diff-lineno">Line 9:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div># If you a) have a taxonomic name hierarchy and b) want to represent a 1:1 match of concept to name then simply select the appropriate taxonomic name and do not provide a OTU name</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div># If you a) have a taxonomic name hierarchy and b) want to represent a 1:1 match of concept to name then simply select the appropriate taxonomic name and do not provide a OTU name</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div># If you don't have a 1:1 match, or want to include multiple concepts for a given name identify your OTUs to the finest level within the taxonomic hierarchy by choosing a the closest taxon name, then repeat the working name as an OTU name. Your name might then look like this: '''''Aus'' &lt;span style=&quot;color:blue;&quot;&gt;Aus sp23&lt;/span&gt;'''.</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div># If you don't have a 1:1 match, or want to include multiple concepts for a given name identify your OTUs to the finest level within the taxonomic hierarchy by choosing a the closest taxon name, then repeat the working name as an OTU name. Your name might then look like this: '''''Aus'' &lt;span style=&quot;color:blue;&quot;&gt;Aus sp23&lt;/span&gt;'''<ins class="diffchange diffchange-inline">.&#160; Remember you are not reading the name across from left to right, you're reading upto 4 different names concatenated for display purposes.&#160; Components of that concatenation are shown individually in their respective places</ins>.</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div># While it is not necessary to tie an OTU to the taxonomic hierarchy you can benefit from doing so as some data (e.g. content) are organized by this hierarchy</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div># While it is not necessary to tie an OTU to the taxonomic hierarchy you can benefit from doing so as some data (e.g. content) are organized by this hierarchy</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div># In collaborative labs it's useful to fill in the Sensu/concept field so as to keep OTUs distinguishable by something other than IDs</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div># In collaborative labs it's useful to fill in the Sensu/concept field so as to keep OTUs distinguishable by something other than IDs</div></td></tr> </table> Matt http://mx.phenomix.org/index.php?title=App/otu&diff=3920&oldid=prev Matt at 18:54, 22 February 2011 2011-02-22T18:54:12Z <p></p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 18:54, 22 February 2011</td> </tr><tr><td colspan="2" class="diff-lineno">Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2">&#160;</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>Data in mx are primarily tied to OTUs, which in turn are linked into a taxonomic names hierarchy. The names are individually used in different contexts (e.g. in public a manuscript name won't be shown, in matrices the matrix name will be used if provided, etc.).&#160; In mx these names are often displayed together and can be identified by their colour:</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>Data in mx are primarily tied to OTUs, which in turn are linked into a taxonomic names hierarchy. The names are individually used in different contexts (e.g. in public a manuscript name won't be shown, in matrices the matrix name will be used if provided, etc.).&#160; In mx these names are often displayed together and can be identified by their colour:</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td colspan="2" class="diff-lineno">Line 10:</td> <td colspan="2" class="diff-lineno">Line 9:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div># If you a) have a taxonomic name hierarchy and b) want to represent a 1:1 match of concept to name then simply select the appropriate taxonomic name and do not provide a OTU name</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div># If you a) have a taxonomic name hierarchy and b) want to represent a 1:1 match of concept to name then simply select the appropriate taxonomic name and do not provide a OTU name</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div># If you don't have a 1:1 match, or want to include multiple concepts for a given name identify your OTUs to the finest level within the taxonomic hierarchy by choosing a the closest taxon name, then repeat the working name as an OTU name <del class="diffchange diffchange-inline">(e</del>.<del class="diffchange diffchange-inline">g. your </del>name might look like this ''Aus &lt;span style=&quot;color:blue;&quot;&gt;Aus sp23&lt;/span&gt;''</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div># If you don't have a 1:1 match, or want to include multiple concepts for a given name identify your OTUs to the finest level within the taxonomic hierarchy by choosing a the closest taxon name, then repeat the working name as an OTU name. <ins class="diffchange diffchange-inline">Your </ins>name might <ins class="diffchange diffchange-inline">then </ins>look like this<ins class="diffchange diffchange-inline">: '''</ins>''Aus<ins class="diffchange diffchange-inline">'' </ins>&lt;span style=&quot;color:blue;&quot;&gt;Aus sp23&lt;/span&gt;''<ins class="diffchange diffchange-inline">'.</ins></div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div># While it is not necessary to tie an OTU to the taxonomic hierarchy you can benefit from doing so as some data (e.g. content) are organized by this hierarchy</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div># While it is not necessary to tie an OTU to the taxonomic hierarchy you can benefit from doing so as some data (e.g. content) are organized by this hierarchy</div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"># In collaborative labs it's useful to fill in the Sensu/concept field so as to keep OTUs distinguishable by something other than IDs</ins></div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"># Consider making ample use of OTU groups as you create OTUs</ins></div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>== OTU Application help ==</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>== OTU Application help ==</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>{{Special:Prefixindex/App/otu/}}</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>{{Special:Prefixindex/App/otu/}}</div></td></tr> </table> Matt http://mx.phenomix.org/index.php?title=App/otu&diff=3919&oldid=prev Matt at 18:51, 22 February 2011 2011-02-22T18:51:44Z <p></p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 18:51, 22 February 2011</td> </tr><tr><td colspan="2" class="diff-lineno">Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">OTUs are the core objects in the database. They represent taxonomic concepts of any level or rank. Most other objects are attached or referenced through an OTU.</del></div></td><td colspan="2">&#160;</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline">By default all the OTUs for the current project </del>are <del class="diffchange diffchange-inline">listed. In most cases you will not want </del>to <del class="diffchange diffchange-inline">see this list</del>, <del class="diffchange diffchange-inline">but rather </del>a <del class="diffchange diffchange-inline">grouped-list</del>. <del class="diffchange diffchange-inline">You can create as many OTU groups as you want </del>in <del class="diffchange diffchange-inline">the Groups + Templates tab</del>. <del class="diffchange diffchange-inline">When there select </del>a <del class="diffchange diffchange-inline">group as a default and when you return to </del>the <del class="diffchange diffchange-inline">OTU tab you’ll only see those group members</del>. <del class="diffchange diffchange-inline">At present the OTU default group is reset every time you enter a project</del>.</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">Data in mx </ins>are <ins class="diffchange diffchange-inline">primarily tied </ins>to <ins class="diffchange diffchange-inline">OTUs</ins>, <ins class="diffchange diffchange-inline">which in turn are linked into </ins>a <ins class="diffchange diffchange-inline">taxonomic names hierarchy</ins>. <ins class="diffchange diffchange-inline">The names are individually used </ins>in <ins class="diffchange diffchange-inline">different contexts (e</ins>.<ins class="diffchange diffchange-inline">g. in public </ins>a <ins class="diffchange diffchange-inline">manuscript name won't be shown, in matrices </ins>the <ins class="diffchange diffchange-inline">matrix name will be used if provided, etc</ins>.<ins class="diffchange diffchange-inline">)</ins>. <ins class="diffchange diffchange-inline"> In mx these names are often displayed together and can be identified by their colour:</ins></div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline">There are various possible names for OTUs. These are </del>color<del class="diffchange diffchange-inline">-coded in </del>the <del class="diffchange diffchange-inline">list as follows</del>:</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">&#160; black name (comes from the link to a taxon name)</ins></div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">&#160; &lt;span style=&quot;</ins>color<ins class="diffchange diffchange-inline">:blue;&quot;&gt;blue name &lt;/span&gt; (comes from </ins>the <ins class="diffchange diffchange-inline">OTU 'name' field)</ins></div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">&#160; &lt;span style=&quot;color</ins>:<ins class="diffchange diffchange-inline">green;&quot;&gt;green name &lt;/span&gt; (comes from the OTU 'matrix name' field)</ins></div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">&#160; &lt;span style=&quot;color:red;&quot;&gt;red name &lt;/span&gt; (comes from the OTU 'manuscript name' field)</ins></div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline">&lt;</del>b<del class="diffchange diffchange-inline">&gt;Taxon Name &lt;span style=&quot;color</del>: <del class="diffchange diffchange-inline">blue;&quot;&gt;Otu Name&lt;/span&gt; &lt;span style=&quot;color</del>: <del class="diffchange diffchange-inline">red;&quot;&gt;Manuscript Name&lt;/span&gt;&#160; </del>&lt;span style=&quot;color: <del class="diffchange diffchange-inline">green</del>;&quot;&gt;<del class="diffchange diffchange-inline">Matrix Name </del>&lt;/span&gt; <del class="diffchange diffchange-inline">&lt;span style=&quot;color: silver;&quot;&gt;</del>(<del class="diffchange diffchange-inline">Containing Taxon name</del>)<del class="diffchange diffchange-inline">&lt;/span&gt;&lt;/b&gt;</del></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">This system allows you to create OTUs in the absence of a taxonomic name hierarchy if needed, and it allows any naming convention to be used (e.g. lab codes, etc.).&#160; Some general guidelines/considerations are useful in practice:</ins></div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>&#160;</div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline"># If you a) have a taxonomic name hierarchy and </ins>b<ins class="diffchange diffchange-inline">) want to represent a 1</ins>:<ins class="diffchange diffchange-inline">1 match of concept to name then simply select the appropriate taxonomic name and do not provide a OTU name</ins></div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline"># If you don't have a 1</ins>:<ins class="diffchange diffchange-inline">1 match, or want to include multiple concepts for a given name identify your OTUs to the finest level within the taxonomic hierarchy by choosing a the closest taxon name, then repeat the working name as an OTU name (e.g. your name might look like this ''Aus </ins>&lt;span style=&quot;color:<ins class="diffchange diffchange-inline">blue</ins>;&quot;&gt;<ins class="diffchange diffchange-inline">Aus sp23</ins>&lt;/span&gt;<ins class="diffchange diffchange-inline">''</ins></div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline"># While it is not necessary to tie an OTU to the taxonomic hierarchy you can benefit from doing so as some data </ins>(<ins class="diffchange diffchange-inline">e.g. content</ins>) <ins class="diffchange diffchange-inline">are organized by this hierarchy</ins></div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>== OTU Application help ==</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>== OTU Application help ==</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>{{Special:Prefixindex/App/otu/}}</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>{{Special:Prefixindex/App/otu/}}</div></td></tr> </table> Matt http://mx.phenomix.org/index.php?title=App/otu&diff=2497&oldid=prev Matt at 16:27, 15 October 2009 2009-10-15T16:27:14Z <p></p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 16:27, 15 October 2009</td> </tr><tr><td colspan="2" class="diff-lineno">Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>OTUs are the core objects in the database. They represent taxonomic concepts of any level or rank. Most other objects are attached or referenced through an OTU.</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>OTUs are the core objects in the database. They represent taxonomic concepts of any level or rank. Most other objects are attached or referenced through an OTU.</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2">&#160;</td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">== Edit ==</del></div></td><td colspan="2">&#160;</td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2">&#160;</td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">=== Published names vs. Containing taxon ===</del></div></td><td colspan="2">&#160;</td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2">&#160;</td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">You can tie your OTU to a published taxonomic name by selecting a taxon name via the blue picker at the top when you edit that OTU. If your OTU represents that taxon name that’s all you need to do. If your OTU is a child of that taxon name you can click the “Is child of published name?” check box. Note that we recently merged the functionality of is/is child to a single dropdown.</del></div></td><td colspan="2">&#160;</td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2">&#160;</td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">=== Manuscript Names ===</del></div></td><td colspan="2">&#160;</td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2">&#160;</td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">Do not place manuscript names in the name field. If you are describing a new species in an currently available genus you should enter the genus name and “new species” in name, field and the full species epithet in the manuscript name field. OTU names are/will be routinely displayed for public use in some cases, and thus it is very important to not include manuscript names in that field.</del></div></td><td colspan="2">&#160;</td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2">&#160;</td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">== List ==</del></div></td><td colspan="2">&#160;</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>By default all the OTUs for the current project are listed. In most cases you will not want to see this list, but rather a grouped-list. You can create as many OTU groups as you want in the Groups + Templates tab. When there select a group as a default and when you return to the OTU tab you’ll only see those group members. At present the OTU default group is reset every time you enter a project.</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>By default all the OTUs for the current project are listed. In most cases you will not want to see this list, but rather a grouped-list. You can create as many OTU groups as you want in the Groups + Templates tab. When there select a group as a default and when you return to the OTU tab you’ll only see those group members. At present the OTU default group is reset every time you enter a project.</div></td></tr> <tr><td colspan="2" class="diff-lineno">Line 18:</td> <td colspan="2" class="diff-lineno">Line 6:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>&lt;b&gt;Taxon Name &lt;span style=&quot;color: blue;&quot;&gt;Otu Name&lt;/span&gt; &lt;span style=&quot;color: red;&quot;&gt;Manuscript Name&lt;/span&gt;&#160; &lt;span style=&quot;color: green;&quot;&gt;Matrix Name &lt;/span&gt; &lt;span style=&quot;color: silver;&quot;&gt;(Containing Taxon name)&lt;/span&gt;&lt;/b&gt;</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>&lt;b&gt;Taxon Name &lt;span style=&quot;color: blue;&quot;&gt;Otu Name&lt;/span&gt; &lt;span style=&quot;color: red;&quot;&gt;Manuscript Name&lt;/span&gt;&#160; &lt;span style=&quot;color: green;&quot;&gt;Matrix Name &lt;/span&gt; &lt;span style=&quot;color: silver;&quot;&gt;(Containing Taxon name)&lt;/span&gt;&lt;/b&gt;</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2">&#160;</td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">== Show options ==</del></div></td><td colspan="2">&#160;</td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2">&#160;</td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">When you Show an OTU numerous options are available on the left.</del></div></td><td colspan="2">&#160;</td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2">&#160;</td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">=== content ===</del></div></td><td colspan="2">&#160;</td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">See [[App/content]].</del></div></td><td colspan="2">&#160;</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>== OTU Application help ==</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>== OTU Application help ==</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>{{Special:Prefixindex/App/otu/}}</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>{{Special:Prefixindex/App/otu/}}</div></td></tr> </table> Matt http://mx.phenomix.org/index.php?title=App/otu&diff=2494&oldid=prev Matt at 16:24, 15 October 2009 2009-10-15T16:24:49Z <p></p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 16:24, 15 October 2009</td> </tr><tr><td colspan="2" class="diff-lineno">Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>OTUs are the core objects in the database. They represent taxonomic concepts of any level or rank. Most other objects are attached or referenced through an OTU.</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>OTUs are the core objects in the database. They represent taxonomic concepts of any level or rank. Most other objects are attached or referenced through an OTU.</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2">&#160;</td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">==New==</del></div></td><td colspan="2">&#160;</td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2">&#160;</td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">There are two ways to create OTUs. Both start by clicking on the New OTU link.</del></div></td><td colspan="2">&#160;</td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2">&#160;</td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"># You may create a single OTU by filling out the form.</del></div></td><td colspan="2">&#160;</td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"># You can create multiple OTUs at once by clicking on the Include all children? checkbox. This creates an OTU for the chosen taxon name, and every child. 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color:black; font-size: smaller;"><div>=== content ===</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>=== content ===</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>See [[App/content]].</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>See [[App/content]].</div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">== OTU Application help ==</ins></div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">{{Special:Prefixindex/App/otu/}}</ins></div></td></tr> </table> Matt http://mx.phenomix.org/index.php?title=App/otu&diff=1970&oldid=prev Matt at 03:10, 11 April 2008 2008-04-11T03:10:28Z <p></p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 03:10, 11 April 2008</td> </tr><tr><td colspan="2" class="diff-lineno">Line 26:</td> <td colspan="2" class="diff-lineno">Line 26:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>&lt;b&gt;Taxon Name &lt;span style=&quot;color: blue;&quot;&gt;Otu Name&lt;/span&gt; &lt;span style=&quot;color: red;&quot;&gt;Manuscript Name&lt;/span&gt;&#160; &lt;span style=&quot;color: green;&quot;&gt;Matrix Name &lt;/span&gt; &lt;span style=&quot;color: silver;&quot;&gt;(Containing Taxon name)&lt;/span&gt;&lt;/b&gt;</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>&lt;b&gt;Taxon Name &lt;span style=&quot;color: blue;&quot;&gt;Otu Name&lt;/span&gt; &lt;span style=&quot;color: red;&quot;&gt;Manuscript Name&lt;/span&gt;&#160; &lt;span style=&quot;color: green;&quot;&gt;Matrix Name &lt;/span&gt; &lt;span style=&quot;color: silver;&quot;&gt;(Containing Taxon name)&lt;/span&gt;&lt;/b&gt;</div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="background: #cfc; 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color:black;">Revision as of 22:59, 26 December 2006</td> </tr><tr><td colspan="2" class="diff-lineno">Line 19:</td> <td colspan="2" class="diff-lineno">Line 19:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>Do not place manuscript names in the name field. If you are describing a new species in an currently available genus you should enter the genus name and “new species” in name, field and the full species epithet in the manuscript name field. OTU names are/will be routinely displayed for public use in some cases, and thus it is very important to not include manuscript names in that field.</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>Do not place manuscript names in the name field. If you are describing a new species in an currently available genus you should enter the genus name and “new species” in name, field and the full species epithet in the manuscript name field. OTU names are/will be routinely displayed for public use in some cases, and thus it is very important to not include manuscript names in that field.</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline">=</del>== List <del class="diffchange diffchange-inline">=</del>==</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>== List ==</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>By default all the OTUs for the current project are listed. In most cases you will not want to see this list, but rather a grouped-list. You can create as many OTU groups as you want in the Groups + Templates tab. When there select a group as a default and when you return to the OTU tab you’ll only see those group members. At present the OTU default group is reset every time you enter a project.</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>By default all the OTUs for the current project are listed. In most cases you will not want to see this list, but rather a grouped-list. You can create as many OTU groups as you want in the Groups + Templates tab. When there select a group as a default and when you return to the OTU tab you’ll only see those group members. At present the OTU default group is reset every time you enter a project.</div></td></tr> </table> 64.110.233.88 http://mx.phenomix.org/index.php?title=App/otu&diff=1513&oldid=prev Seltmann at 22:31, 22 December 2006 2006-12-22T22:31:13Z <p></p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black;">← Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 22:31, 22 December 2006</td> </tr><tr><td colspan="2" class="diff-lineno">Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>OTUs are the core objects in the database. They represent taxonomic concepts of any level or rank. Most other objects are attached or referenced through an OTU.</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>OTUs are the core objects in the database. They represent taxonomic concepts of any level or rank. Most other objects are attached or referenced through an OTU.</div></td></tr> <tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline">[[Image:normal.jpg]]</del></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>&#160;</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>==New==</div></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"><div>==New==</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'>&#160;</td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> </table> Seltmann